cache_download_ensemblvep_snpeff

downlad annotation cache for snpeff and ensemblvep

ensemblvepsnpeffdownloadannotationcache

https://github.com/nf-core/modules/[...]/subworkflows/nf-core/cache_download_ensemblvep_snpeff

Description

downlad annotation cache for snpeff and ensemblvep

Input

name

description

pattern

`ensemblvep_info`

All information necessary to download the cache
Structure: [ val(meta), val(ensemblvep_genome), val(ensemblvep_species), val(ensemblvep_cache_version) ]

`snpeff_info`

All information necessary to download the cache
Structure: [ val(meta), val(snpeff_db) ]

`ensemblvep_preflight_check`

Whether to check that the expected cache file is listed in the Ensembl CHECKSUMS file before downloading
Structure: val(true/false)

Output

name

description

pattern

`ensemblvep_cache`

Path to ensemblvep cache
Structure: [ val(meta), path(cache) ]

`snpeff_cache`

Path to snpeff cache
Structure: [ val(meta), path(cache) ]